NCAA Division II independent schools

NCAA Division II independent schools are four-year institutions that field intercollegiate teams in football and other sports, but which are not formally affiliated with any athletic conference.

Provisional Division II member

 * Note South Dakota Mines will affiliate with the Great Northwest Athletic Conference in Men's Soccer for the 2013 season and in Football for the 2014 and 2015 seasons.

Full Division II member

 * Note * - North Greenville has a "scheduling alliance" with the South Atlantic Conference for logistical purposes only.